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Publications for Timo Koski

Journal Articles

Martin Ohlson and Timo Koski
  On the Distribution of Matrix Quadratic Forms
  Communications in Statistics - Theory and Methods, 2012, 41(18), 3403-315.
   Fulltext  PDF  

Jukka Corander, Magnus Ekdahl and Timo Koski
  Parallell interacting MCMC for learning of topologies of graphical models
  Data mining and knowledge discovery, 2008, 17(3), 431-456.
 Web of Science® Times Cited: 22

Timo Koski, Jukka Corander and Mats Gyllenberg
  Random Partition Models and Exchangeability for Bayesian Identification of Population Structure
  Bulletin of Mathematical Biology, 2007, 69(3), 797-815.
 Web of Science® Times Cited: 25

Timo Koski, Jukka Corander and Mats Gyllenberg
  Bayesian model learning based on a parallel MCMC strategy
  Statistics and computing, 2006, 16(2), 355-362.
 Web of Science® Times Cited: 37

Magnus Ekdahl and Timo Koski
  Bounds for the Loss in Probability of Correct Classification Under Model Based Approximation
  Journal of Machine Learning Research, 2006, 7, 2449-2480.
 Web of Science® Times Cited: 5

Peter Dawyndt, Jean Swings, Brian Austin, Fabiano Thompson, Timo Koski and Mats Gyllenberg
  A complementary approach to systematics
  Microbiology Today, 2005, (February), 38-38.

Ville-Veikko Rantanen, Mats Gyllenberg, Timo Koski and Mark S. Johnson
  A Priori Contact Preferences in Molecular Recognition
  Journal of Bioinformatics and Computational Biology, 2005, 3(4), 861-890.

Peter Dawyndt, Fabiano Thompson, Brian Austin, Jean Swings, Timo Koski and Mats Gyllenberg
  Application of sliding-window discretization and minimization of stochastic complexity for the analysis of fAFLP genotyping fingerprint patterns of Vibrionaceae
  International Journal of Systematic and Evolutionary Microbiology, 2005, 55(1), 57-66.
 Web of Science® Times Cited: 2

Brian Austin, Peter Dawyndt, Mats Gyllenberg, Tatu Lund, Jean Swings, Fabiano Thompson and Timo Koski
  Sliding window discretization: A new method for multiple band matching of bacterial genotyping fingerprints
  Bulletin of Mathematical Biology, 2004, 66(6), 1575-1596.
 Web of Science® Times Cited: 2

Timo Koski and H. Hurd
  The Wold isomorphism for cyclostationary sequences
  Signal Processing, 2004, 84(5), 813-824.
 Web of Science® Times Cited: 8

VV Rantanen, M Gyllenberg, Timo Koski and MS Johnson
  A Bayesian molecular interaction library
  Journal of Computer-Aided Molecular Design, 2003, 17(7), 435-461.
 Web of Science® Times Cited: 11

Timo Koski, Ville-Veikko Rantanen, Mats Gyllenberg and Mark S. Johnson
  A dissimilarity matrix between protein atom classes based on Gaussian mixtures
  Bioinformatics, 2002, 18(9), 1257-1263.
 Web of Science® Times Cited: 4

M Gyllenberg, Timo Koski, P Dawyndt, T Lund, F Thompson, B Austin and J Swings
  New methods for the analysis of binarized BIOLOG GN data of vibrio species: Minimization of stochastic complexity and cumulative classification
  Systematic and Applied Microbiology, 2002, 25(3), 403-415.
 Web of Science® Times Cited: 4

V.-V. Rantanen, K.A. Denessiouk, M. Gyllenberg, Timo Koski and M.S. Johnson
  A fragment library based on Gaussian mixtures predicting favorable molecular interactions
  Journal of Molecular Biology, 2001, 313(1), 197-214.
 Web of Science® Times Cited: 24

M Gyllenberg and Timo Koski
  Probabilistic models for bacterial taxonomy
  International Statistical Review, 2001, 69(2), 249-276.
 Web of Science® Times Cited: 10


Timo Koski and John Noble
  Bayesian Networks: An Introduction
    Wiley Series in Probability and Statistics, , Wiley, 2009.

Chapters in Books

Magnus Ekdahl and Timo Koski
  On Concentration of Discrete Distributions with Applications to Supervised Learning of Classifiers
  Machine Learning and Data Mining in Pattern Recognition: 5th International Conference, MLDM 2007, Leipzig, Germany, July 18-20, 2007. Proceedings, Springer Berlin/Heidelberg, 2007, 2-16.

Timo Koski and Harry Hurd
  Cyclostationary Arrays: Their Unitary Operators and Representations
  Stochastic Processes and Functional Analysis:: A Volume of Recent Advances in Honor of M.M. Rao, Marcel Dekker Inc., 2004, 171-194.

Timo Koski, M. Gyllenberg and J. Carlsson
  Bayesian Network Classification of Binarized DNA Fingerprinting Patterns
  Mathematical modelling & computing in biology and medicine: 50th ESMTB Conference 2002, Progetto Leonardo, 2003, 60-66.

Conference Articles

Magnus Ekdahl and Timo Koski
  On the Performance of Approximations of Bayesian Networks in Model-
  The Annual Workshop of the Swedish Artificial Intelligence Society,2006, 2006.

Timo Koski
  Bacterial identification using 16S rRNA fragments by hidden Markov models
  54th Session of the International Statistical Institute,2003, 2003.

Timo Koski
  Dynamic Bayesian networks in a study of genetic interactions
  Föreningen för medicinsk statistik, årsmöte,2003, 2003.

M. Gyllenberg and Timo Koski
  Bayesian predictiveness, exchangeability and sufficientness in bacterial taxonomy
  Mathematical Biosciences, 2002.

 Web of Science® Times Cited: 6

Ph.D. Theses

Martin Ohlson
  Studies in Estimation of Patterned Covariance Matrices

  Fulltext PDF

Licentiate Theses

Magnus Ekdahl
  Approximations of Bayes Classifiers for Statistical Learning of Clusters

  Fulltext PDF


Martin Ohlson and Timo Koski
  The Likelihood Ratio Statistic for Testing Spatial Independence using a Separable Covariance Matrix
  LiTH-MAI-R, 2009:06, 2009.

Timo Koski
  Lectures at RNI on Probabilistic Models and Inference for Phylogenetics
  Linköping Studies in Mathematics, 1, 2004.

  Fulltext PDF

Timo Koski, Roland Orre and Niklas Norén
  Statistics of the information component updated
  TRITA-NA-P0311, KTHNAp_0311SE, 2003.


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Last updated: 2010-08-30