Göm menyn

Publications for Mika Gustafsson

Co-author map based on Web of Sciences articles 2007-

Publications mentioned in social media 258 times*

Journal Articles

Sebastian Vlaic, Theresia Conrad, Christian Tokarski-Schnelle, Mika Gustafsson, Uta Dahmen, Reinhard Guthke and Stefan Schuster
  ModuleDiscoverer: Identification of regulatory modules in protein-protein interaction networks
  Scientific Reports, 2018, 8, .
   Fulltext  PDF  
 Web of Science® Times Cited: 1

Rasmus Magnusson, Mika Gustafsson, Gunnar Cedersund, Peter Strålfors and Elin Nyman
  Cross-talks via mTORC2 can explain enhanced activation in response to insulin in diabetic patients
  Bioscience Reports, 2017, 37, .
   Fulltext  PDF  

Jana Schleicher, Theresia Conrad, Mika Gustafsson, Gunnar Cedersund, Reinhard Guthke and Jörg Linde
  Facing the challenges of multiscale modelling of bacterial and fungal pathogen-host interactions
  Briefings in Functional Genomics & Proteomics, 2017, 16(2), 57-69.
   Fulltext  PDF  

Rasmus Magnusson, Guido Mariotti, Mattias Köpsén, William Lövfors, Danuta Gawel, Rebecka Jornsten, Joerg Linde, Torbjorn Nordling, Elin Nyman, Sylvie Schulze, Colm Nestor, Hanmin Zhang, Gunnar Cedersund, Mikael Benson, Andreas Tjärnberg and Mika Gustafsson
  LASSIM-A network inference toolbox for genome-wide mechanistic modeling
  PloS Computational Biology, 2017, 13(6), .
   Fulltext  PDF  

Colm Nestor, Antonio Lentini, Cathrine Hägg Nilsson, Danuta Gawel, Mika Gustafsson, Lina Mattson, Hui Wang, Olof Rundquist, Richard R. Meehan, Bernward Klocke, Martin Seifert, Stefanie M. Hauck, Helmut Laumen, Huan Zhang and Mikael Benson
  5-Hydroxymethylcytosine Remodeling Precedes Lineage Specification during Differentiation of Human CD4(+) T Cells
  Cell reports, 2016, 16(2), 559-570.
   Fulltext  PDF  
 Web of Science® Times Cited: 8

Jordi Serra-Musach, Francesca Mateo, Eva Capdevila-Busquets, Gorka Ruiz de Garibay, Xiaohu Zhang, Raj Guha, Craig J. Thomas, Judit Grueso, Alberto Villanueva, Samira Jaeger, Holger Heyn, Miguel Vizoso, Hector Perez, Alex Cordero, Eva Gonzalez-Suarez, Manel Esteller, Gema Moreno-Bueno, Andreas Tjärnberg, Conxi Lazaro, Violeta Serra, Joaquin Arribas, Mikael Benson, Mika Gustafsson, Marc Ferrer, Patrick Aloy and Miquel Angel Pujana
  Cancer network activity associated with therapeutic response and synergism
  Genome Medicine, 2016, 8(88), .
   Fulltext  PDF  
 Web of Science® Times Cited: 2

Sandra Hellberg, Daniel Eklund, Danuta Gawel, Mattias Köpsén, Huan Zhang, Colm Nestor, Ingrid Kockum, Tomas Olsson, Thomas Skogh, Alf Kastbom, Christopher Sjöwall, Magnus Vrethem, Irene Håkansson, Mikael Benson, Maria Jenmalm, Mika Gustafsson and Jan Ernerudh
  Dynamic Response Genes in CD4+T Cells Reveal a Network of Interactive Proteins that Classifies Disease Activity in Multiple Sclerosis
  Cell reports, 2016, 16(11), 2928-2939.
   Fulltext  PDF  
 Web of Science® Times Cited: 4

Lina Mattson, Antonio Lentini, Danuta Gawel, Tejaswi Badam, Mikael Benson, Torbjörn Ledin, Colm Nestor, Mika Gustafsson, Jordi Serra I Musach, Janne Björkander, Zou Xiang and Huan Zhang
  Potential Involvement of Type I Interferon Signaling in Immunotherapy in Seasonal Allergic Rhinitis
  Journal of Immunology Research, 2016, , .
   Fulltext  PDF  

Mika Gustafsson, Danuta Gawel, Lars Alfredsson, Sergio Baranzini, Janne Bjorkander, Robert Blomgran, Sandra Hellberg, Daniel Eklund, Jan Ernerudh, Ingrid Kockum, Aelita Konstantinell, Riita Lahesmaa, Antonio Lentini, H. Robert I. Liljenström, Lina Mattson, Andreas Matussek, Johan Mellergård, Melissa Mendez, Tomas Olsson, Miguel A. Pujana, Omid Rasool, Jordi Serra-Musach, Margaretha Stenmarker, Subhash Tripathi, Miro Viitala, Hui Wang, Huan Zhang, Colm Nestor and Mikael Benson
  A validated gene regulatory network and GWAS identifies early regulators of T cell-associated diseases
  Science Translational Medicine, 2015, 7(313), .
   Fulltext  PDF  
 Web of Science® Times Cited: 16

Sören Bruhn, Yu Fang, Fredrik Barrenäs, Mika Gustafsson, Huan Zhang, Aelita Konstantinell, Andrea Kronke, Birte Sonnichsen, Anne Bresnick, Natalya Dulyaninova, Hui Wang, Yelin Zhao, Jorg Klingelhofer, Noona Ambartsumian, Mette K. Beck, Colm Nestor, Elsa Bona, Zou Xiang and Mikael Benson
  A Generally Applicable Translational Strategy Identifies S100A4 as a Candidate Gene in Allergy
  Science Translational Medicine, 2014, 6(218), .
   Fulltext  PDF  
 Web of Science® Times Cited: 14

Colm Nestor, Fredrik Barrenäs, Hui Wang, Antonio Lentini, Huan Zhang, Sören Bruhn, Rebecka Jornsten, Michael A. Langston, Gary Rogers, Mika Gustafsson and Mikael Benson
  DNA Methylation Changes Separate Allergic Patients from Healthy Controls and May Reflect Altered CD4(+) T-Cell Population Structure
  PLoS Genetics, 2014, 10(1), e1004059.
   Fulltext  PDF  
 Web of Science® Times Cited: 29

Mika Gustafsson, Måns Edström, Danuta Gawel, Colm Nestor, Hui Wang, Huan Zhang, Fredrik Barrenäs, James Tojo, Ingrid Kockum, Tomas Olsson, Jordi Serra-Musach, Nuria Bonifaci, Miguel Angel Pujana, Jan Ernerudh and Mikael Benson
  Integrated genomic and prospective clinical studies show the importance of modular pleiotropy for disease susceptibility, diagnosis and treatment
  Genome Medicine, 2014, 6(17), .
   Fulltext  PDF  
 Web of Science® Times Cited: 9

Mika Gustafsson, Colm Nestor, Huan Zhang, Albert-Laszlo Barabasi, Sergio Baranzini, Soeren Brunak, Kian Fan Chung, Howard J. Federoff, Anne-Claude Gavin, Richard R. Meehan, Paola Picotti, Miguel Angel Pujana, Nikolaus Rajewsky, Kenneth G. C. Smith, Peter J. Sterk, Pablo Villoslada and Mikael Benson
  Modules, networks and systems medicine for understanding disease and aiding diagnosis
  Genome Medicine, 2014, 6(82), .
   Fulltext  PDF  
 Web of Science® Times Cited: 59

Colm E Nestor, Elham Dadfa, Jan Ernerudh, Mika Gustafsson, Jan Fredrik Björkander, Mikael Benson and Huan Zhang
  Sublingual immunotherapy alters expression of IL-4 and its soluble and membrane-bound receptors
  Allergy. European Journal of Allergy and Clinical Immunology, 2014, 69(11), 1564-1566.
 Web of Science® Times Cited: 6

Huan Zhang, Mika Gustafsson, Colm E Nestor, Kian Fan Chung and Mikael Benson
  Targeted omics and systems medicine: personalising care
  The Lancet Respiratory Medicine, 2014, 2(10), 785-787.
 Web of Science® Times Cited: 17

Danuta Gawel, A. Rani James, Mikael Benson, R. Liljenstrom, A. Muraro, Colm Nestor, Huan Zhang and Mika Gustafsson
  The Allergic Airway Inflammation Repository - a user-friendly, curated resource of mRNA expression levels in studies of allergic airways
  Allergy. European Journal of Allergy and Clinical Immunology, 2014, 69(8), 1115-1117.
   Fulltext  PDF  

Yelin Zhao, Hui Wang, Mika Gustafsson, Antonella Muraro, Sören Bruhn and Mikael Benson
  Combined Multivariate and Pathway Analyses Show That Allergen-Induced Gene Expression Changes in CD4(+) T Cells Are Reversed by Glucocorticoids
  PLoS ONE, 2012, 7(6), .
   Fulltext  PDF  
 Web of Science® Times Cited: 7

Sören Bruhn, Mark Katzenellenbogen, Mika Gustafsson, Andrea Krönke, Birte Sönnichsen, Huan Zhang and Mikael Benson
  Combining gene expression microarray- and cluster analysis with sequence-based predictions to identify regulators of IL-13 in allergy
  Cytokine, 2012, 60(3), 736-740.
 Web of Science® Times Cited: 3

A-K M Sjogren, Fredrik Barrenäs, A Muraro, Mika Gustafsson, P Saetrom, Hui Wang and Mikael Benson
  Monozygotic twins discordant for intermittent allergic rhinitis differ in mRNA and protein levels
  Allergy. European Journal of Allergy and Clinical Immunology, 2012, 67(6), 831-833.
 Web of Science® Times Cited: 5

Michael Hörnquist and Mika Gustafsson
  Stability and Flexibility from a System Analysis of Gene RegulatoryNetworks Based on Ordinary Differential Equations
  The Open Bioinformatics Journal, 2011, 5, 26-33.
   Fulltext  PDF  

Mika Gustafsson and Michael Hörnquist
  Gene Expression Prediction by Soft Integration and the Elastic Net: Best Performance of the DREAM3 Gene Expression Challenge
  PLoS ONE, 2010, 5(2), e9134.
   Fulltext  PDF  
 Web of Science® Times Cited: 13

Mika Gustafsson, Michael Hörnquist, J Bjorkegren and Jesper Tegnér
  Genome-wide system analysis reveals stable yet flexible network dynamics in yeast
  IET SYSTEMS BIOLOGY, 2009, 3(4), 219-228.
   Fulltext  PDF  
 Web of Science® Times Cited: 7

Mika Gustafsson, Michael Hörnquist, Jesper Lundstrom, Johan Bjorkegren and Jesper Tegnér
  Reverse Engineering of Gene Networks with LASSO and Nonlinear Basis Functions
   Fulltext  PDF  
 Web of Science® Times Cited: 17

Mika Gustafsson, Michael Hörnquist, Jesper Tegnér and et al. 155 external authors
  The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
  Nature Genetics, 2009, 41, 553-562.
 Web of Science® Times Cited: 277

Mika Gustafsson, Michael Hörnquist and Anna Lombardi
  Comparison and validation of community structures in complex networks
  Physica A: Statistical Mechanics and its Applications, 2006, 367, 559-576.
 Web of Science® Times Cited: 33

Mika Gustafsson, Michael Hörnquist and Anna Lombardi
  Constructing and analyzing a large-scale gene-to-gene regulatory network Lasso-constrained inference and biological validation
  IEEE/ACM Transactions on Computational Biology & Bioinformatics, 2005, 2(3), 254-261.
 Web of Science® Times Cited: 55

Chapters in Books

Mika Gustafsson and Michael Hörnquist
  Integrating various data sources for improved quality in reverse engineering of gene regulatory networks
  Handbook of Research on Computational Methodologies in Gene Regulatory Networks, IGI Global, 2009, 476-496.

Conference Articles

Mika Gustafsson and Michael Hörnquist
  Gene expression prediction by the elastic net
  DREAM,2008, 2008.

Mika Gustafsson and Michael Hörnquist
  In-silico network predictions by ODE and lasso
  DREAM,2008, 2008.

Mika Gustafsson, Michael Hörnquist, Johan Björkegren and Jesper Tegnér
  Soft Integration of Data for Reverse Engineering
  International Conference on Systems Biology,2008, 2008.

Mika Gustafsson, Michael Hörnquist and Anna Lombardi
  Combination of gene clusterings enhances biological validity
  Reglermöte,2004, 2004.

Mika Gustafsson, Michael Hörnquist and Anna Lombardi
  Community structure in "gene-to-gene" networks
  BioInformatics Conference,2004, 2004.

Ph.D. Theses

Danuta R. Gawel
  Identification of genes and regulators that are shared across T cell associated diseases

  Fulltext PDF

Mika Gustafsson
  Gene networks from high-throughput data: Reverse engineering and analysis

  Fulltext PDF

Licentiate Theses

Mika Gustafsson
  Large-scale topology, stability and biology of gene networks

* Social media data based on publications from 2011 to present and with a DOI; data delivered by Altmetric.com.


Responsible for this page: Peter Berkesand
Last updated: 2010-08-30